Package CHEM :: Package feature :: Module OBMOL :: Class OBGraphMolFactory
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Class OBGraphMolFactory



Instance Methods [hide private]
 
__init__(self, format='smi', label="LIVA:amode=0,bmode=0")
 
__call__(self, input)
 
stream(self, inputstream)
returns an iterator which returns a Graph at each iteration.
 
error_callback(self, str)
 
optparse(self, parser)
 
setoptions(self, options)
 
parse(self, inputstring)
 
parselabel(self, inputstring)
 
Label(self, graph, method=None)
 
label_SYBYL(self, graph, bmode=0)
 
label_EH(self, graph, amode=0, bmode=0)
 
label_EC(self, graph, amode=0, bmode=0)
Element + the Connectivity
 
label_EC1(self, graph, amode=0, bmode=0)
Element + the Connectivity, fixed bug with bond typing in label_EC.
 
get_BOND_SYMBOLS(self, bmode)
 
label_LIVA(self, graph, amode=0, bmode=0)
 
label_XSCORE(self, graph, bmode=0)
H Hydrophobic A Acceptor D Donor B Both acceptor and donor P Polar O Other
 
label_NULL(self, graph)