Package CHEM :: Package DB :: Module ReactDBPopulator :: Class ChemicalAnnotationIteratorPreparer

Class ChemicalAnnotationIteratorPreparer

BaseDBPopulator.BaseIteratorPreparer --+
                                       |
                                      ChemicalAnnotationIteratorPreparer

Called once per reaction_step_chemical to generate a parent chemical record for a new reaction component.

Instance Methods

[hide private]

__init__(self, conn, tableName)
Default constructor should just expect a connection object to the database and name of the table it is meant to affect / relate to, but subclasses may override.

newDefaultObject(self)
Differentiate reference name from table name

prepareIterator(self, parentObj)
Parent object should be a component_type with an associated (reaction) mol object with the chemical data encoded as an SD tagged data to extract.

Class Variables

[hide private]

tempMol = <CHEM.DB.rdb.search.NameRxnPatternMatchingModel.Sear...

Method Details

[hide private]

init(self, conn, tableName)
(Constructor)

Default constructor should just expect a connection object to the database and name of the table it is meant to affect / relate to, but subclasses may override.

Overrides: BaseDBPopulator.BaseIteratorPreparer.__init__: (inherited documentation)

newDefaultObject(self)

Differentiate reference name from table name

Overrides: BaseDBPopulator.BaseIteratorPreparer.newDefaultObject

prepareIterator(self, parentObj)

Parent object should be a component_type with an associated (reaction) mol object with the chemical data encoded as an SD tagged data to extract.

Overrides: BaseDBPopulator.BaseIteratorPreparer.prepareIterator

Class Variable Details

[hide private]

tempMol

Value:

None

Class ChemicalAnnotationIteratorPreparer

__init__(self, conn, tableName) (Constructor)

newDefaultObject(self)

prepareIterator(self, parentObj)

tempMol

init(self, conn, tableName)
(Constructor)