Package CHEM :: Package Annotation :: Module BaseAnnotator :: Class DatabasePopulator

Class DatabasePopulator

BasePopulator --+
                |
               DatabasePopulator

Concrete implementation of BasePopulator. Iterates through objects, calculates annotations and updates respective rows in the database.

Instance Methods

__init__(self, tableName)
Constructor needs to know the name of the table to update

setUp(self)
First thing executed at beginning of run method.

tearDown(self)
Last thing done at end of run method.

populate(self, input, annotations, idAnnotations)
Primary method.

Method Details

Constructor needs to know the name of the table to update

First thing executed at beginning of run method. Default to extracting the list of data and ID column names.

Last thing done at end of run method. Default to do nothing

Primary method. Take the annotation values updates the respective database record with those values.