LBS-1 regulated genes filtered by 3' UTR binding sites
Table of Contents
1 Results
| Transcription Factor | Identifier | Consensus | Gene info. |
|---|---|---|---|
| GLD1 | CELEGANS00002 | TACTMAN{0,15}TAAR | file:CELEGANS00002.txt |
| FBF | CELEGANS00003 | TGTAHHATA | file:CELEGANS00003.txt |
| PUF-8 | CELEGANS00004 | TGTAHATAN | file:CELEGANS00004.txt |
| PUF-5 | CELEGANS00005 | HNCTGTHHYYTKW | file:CELEGANS00005.txt |
| Mex-3 | CELEGANS00006 | DKAGN{0,15}TKTA | file:CELEGANS00006.txt |
Note: Filtered LBS-1 pairs based on BBLS > 0.00001, NLOD > 0.83, 40 BP < distance between pairs < 60 BP.
2 UCSC Custom track
Click here to visit UCSC and see the genome annotations for putative binding sites around genes containing atleast 2 nearby LBS-1 binding sites and a 3' UTR motif.
3 Examples
3.1 figl-1 with FBF motif
figl-1 with FBF
3.2 F12F3.1d with GLD bi-partitite motif
F12F3.1d with GLD
Date: 2010-03-22 15:27:31 PDT
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