vcsm.h

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#ifndef _VCSM_H_
#define _VCSM_H_

/* Generic headers */
#include "maloc/maloc.h"
#include "apbs/vhal.h"
#include "apbs/valist.h"

/* Specific headers */
#include "mc/mc.h"

void Gem_setExternalUpdateFunction(
        Gem *thee, 
        void (*externalUpdate)(SS **simps, int num) 
        );

struct sVcsm { 

  Valist *alist;      
  int natom;          
  Gem *gm;            
  int **sqm;          
  int *nsqm;          
  int nsimp;          
  int msimp;          
  int **qsm;          
  int *nqsm;          
  int initFlag;       
  Vmem *vmem;         
};

typedef struct sVcsm Vcsm;

/* ///////////////////////////////////////////////////////////////////////////
// Class Vcsm: Inlineable methods (vcsm.c)

#if !defined(VINLINE_VCSM)

    Valist* Vcsm_getValist(
            Vcsm *thee 
            );

    int Vcsm_getNumberAtoms(
            Vcsm *thee,  
            int isimp  
            );

    Vatom* Vcsm_getAtom(
            Vcsm *thee,  
            int iatom,  
            int isimp  
            );

    int Vcsm_getAtomIndex(
            Vcsm *thee,  
            int iatom,  
            int isimp  
            );

    int Vcsm_getNumberSimplices(
            Vcsm *thee,  
            int iatom  
            );

    SS* Vcsm_getSimplex(
            Vcsm *thee,  
            int isimp,  
            int iatom  
            );

    int Vcsm_getSimplexIndex(
            Vcsm *thee,  
            int isimp,  
            int iatom  
            );

    unsigned long int Vcsm_memChk(
            Vcsm *thee 
            );

#else /* if defined(VINLINE_VCSM) */
#   define Vcsm_getValist(thee) ((thee)->alist)
#   define Vcsm_getNumberAtoms(thee, isimp) ((thee)->nsqm[isimp])
#   define Vcsm_getAtom(thee, iatom, isimp) (Valist_getAtom((thee)->alist, ((thee)->sqm)[isimp][iatom]))
#   define Vcsm_getAtomIndex(thee, iatom, isimp) (((thee)->sqm)[isimp][iatom])
#   define Vcsm_getNumberSimplices(thee, iatom) (((thee)->nqsm)[iatom])
#   define Vcsm_getSimplex(thee, isimp, iatom) (Gem_SS((thee)->gm, ((thee)->qsm)[iatom][isimp]))
#   define Vcsm_getSimplexIndex(thee, isimp, iatom) (((thee)->qsm)[iatom][isimp])
#   define Vcsm_memChk(thee) (Vmem_bytes((thee)->vmem))
#endif /* if !defined(VINLINE_VCSM) */

/* ///////////////////////////////////////////////////////////////////////////
// Class Vcsm: Non-Inlineable methods (vcsm.c)

Vcsm* Vcsm_ctor(
        Valist *alist,  
        Gem *gm  
        );

int Vcsm_ctor2(
        Vcsm *thee,  
        Valist *alist,  
        Gem *gm  
        );

void Vcsm_dtor(
        Vcsm **thee  
        );

void Vcsm_dtor2(
        Vcsm *thee 
        );

void Vcsm_init(
        Vcsm *thee 
        );

int Vcsm_update(
        Vcsm *thee, 
        SS **simps, 
        int num 
        );

#endif /* ifndef _VCSM_H_ */

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